PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g09810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 224aa    MW: 24277 Da    PI: 9.5016
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g09810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY22.82.8e-075917942156
            YABBY  42 Ctsllsvnlakas...qllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl...senedeevprvppvirPPekrqrvPsay 129
                      C+ ++++n++ +    ++  ++s ++ ++++++++ +++   ++++   k    ++  + +     ++ +  ++++ +++ + P+k +r Psa+
  Vradi09g09810.1  59 CAVVMALNVSCNGgvfHADMVMSYFSGTGTQTMKNAKGKGAVKVSKEALKPVDDRKVGKRKAPskpDKGSAPKAKKEKKAKKDPNKPKRPPSAF 152
                      444555555554433344444555555555555555444444444444443333333333333112444555556666799************* PP

            YABBY 130 nrfikeeiqrikasnPdishreafsaa 156
                        f+ e  q  ka+nP++    a   a
  Vradi09g09810.1 153 FVFLEEFRQTFKAENPNVKAVSAVGKA 179
                      *****************9877776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470952.62E-16130189IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.7E-14144190IPR009071High mobility group box domain
SMARTSM003984.1E-13144211IPR009071High mobility group box domain
PROSITE profilePS5011813.202145199IPR009071High mobility group box domain
CDDcd013901.51E-14145199No hitNo description
PfamPF005053.1E-14145190IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLDSLKSREL LLCALSPNLA LPHVEWCVES HGSSLDLTCW WLLLVAFLCG GGHCSQRFCA  60
VVMALNVSCN GGVFHADMVM SYFSGTGTQT MKNAKGKGAV KVSKEALKPV DDRKVGKRKA  120
PSKPDKGSAP KAKKEKKAKK DPNKPKRPPS AFFVFLEEFR QTFKAENPNV KAVSAVGKAG  180
GEKWKSLSSA MHSETDKSKS EVNDEDDEAS AELLELPSLS YRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0892344e-91BT089234.1 Soybean clone JCVI-FLGm-1O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515007.12e-59PREDICTED: high mobility group B protein 1
RefseqXP_014515009.12e-59PREDICTED: high mobility group B protein 1
RefseqXP_014515010.12e-59PREDICTED: high mobility group B protein 1
RefseqXP_014515011.12e-59PREDICTED: high mobility group B protein 1
SwissprotO495951e-46HMGB1_ARATH; High mobility group B protein 1
TrEMBLA0A0L9VTF12e-59A0A0L9VTF1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SWR72e-59A0A0S3SWR7_PHAAN; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50012816e-46(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF492922